PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00010.1_g00026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family E2F/DP
Protein Properties Length: 410aa    MW: 45702.1 Da    PI: 4.4331
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00010.1_g00026.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP85.54.2e-27118183171
                  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                              r+++sL llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
  Rsa1.0_00010.1_g00026.1 118 RYDSSLALLTKKFINLIKQAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIKWKG 183
                              6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-28115185IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-17118181IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013723.4E-34118183IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.8E-24120183IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.81E-44194300No hitNo description
SuperFamilySSF1440741.15E-31195300No hitNo description
PfamPF164219.3E-32199298IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MSDPHQQPER NQPYNRQHHP SVASMKPPLV APGEYHRFDA AETHGGGGGP DQVSEEIVIK  60
SSLKRKTDLV DEPIEFNTGV LQTPVPGKGG KAKKSSRSYV KSNAGSPGNN LAQAGACRYD  120
SSLALLTKKF INLIKQAEDG ILDLNKAADT LEVQKRRIYD ITNVLEGIGL IEKTLKNRIK  180
WKGLDVSNPG ETMENIANLQ DELQNLAFEE AKLDDQIRES QERLTSLSED ENNKRLLFVT  240
EDDIKNLPCF QNSTLIAVKA PHGTTLEVPD PDEAGGYPQR RYRIILRSTM GPIDVYLVSQ  300
FEETFEDIPN ADEPSNVPST SGLPDNQDVS MPMKEDITVK NMETQEVDDT HRVSSDVESH  360
DFVDGIMKIV PPDLDMDVDY WLRSEVGEVS ITDMWPNECI LDPVTFFALI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-23117184674PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4000000.0AF400000.1 Thlaspi caerulescens E2F-related transcription factor 1 (E2F1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013734955.10.0PREDICTED: transcription factor E2FB-like
RefseqXP_013608798.10.0PREDICTED: transcription factor E2FB
SwissprotQ9FV710.0E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A078DYK70.0A0A078DYK7_BRANA; BnaA10g14120D protein
STRINGBra002398.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.30.0E2F transcription factor 1